molecules
  • Clusters Description


    ClustersDistr
    • total: total number of clusters in CoDNaS-RNA
    • gold: number of invariable clusters under alternative clustering methods
    • RNA_RNA: number of clusters with RNA-RNA interactions
    • RNA_Prot: number of clusters with RNA-Protein interactions
    • RNA_DNA: number of clusters with RNA-DNA interactions

    RNA Types


    RnaType
    • hh_ribozyme: hammerhead ribozymes
    • misc_RNA: miscellaneous RNAs according to INSCD
    • other: RNAs of other types according to INSCD
  • Distribution of RMSD Values


    Rmsd
    • non-max pairs: distribution of RMSD values per pair excluding pairs with maximum RMSD
    • max pairs: distribution of RMSD values in pairs with maximum RMSD

    TM-score Description


    TMscore
    • non-max pairs: distribution of TM-score values per pair excluding pairs with maximum RMSD
    • max pairs: distribution of TM-score values in pairs with maximum RMSD
  • Interactions


    InteractionsStats
    • ligand:ligand: ligand:ligand contacts per residue
    • nt:aa: nucleotide-amino acid contacts per residue
    • nt:ligand: nucleotide-ligand contacts per residue

    InteractionsStats
    • ligand:ligand: ligand:ligand contacts per residue
    • aa:ligand: aa:ligand contacts per residue
    • nt:misc: other nucleotides contacts per residue

    InteractionsStats
    • aa:misc: other amino acid contacts per residue
    • misc:misc: other types of contacts per residue
    • ligand:misc: other ligand contacts per residue

    Experimental Methods and Physicochemical Conditions


    Methods
    • X-Ray Diffraction: number of PDB chains solved by x-ray diffraction
    • Solution NMR:number of PDB chains solved by solution nmr
    • Electron Microscopy: number of PDB chains solved by cryo-electron microscopy

    DiffTemp
    • Difference in temperature: binned difference in temperature values present per aligned pair

    DiffPh
    • Difference in pH: binned difference in pH values present per aligned pair
  • Conformers & chains information


    NumConf
    • Num. conf. intervals: binned number of conformers per cluster

    Rmsd
    • Seq. length: binned sequence length per RNA chain

    Main RNA Species Composition


    Organism
    • Others: includes 118 species represented in 550 RNA chains